SNP Profiles of SCA 19   View Data

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_Input profile
GGTTCCGTCCAACGAGCTAAGGAACCCT
1._SCA_19
GGTTCCGTCCAACGAGCTAAGGAACCCT
2._SCA_19
GGTTCCGTCCAACGAGCTAAGGAACCCT
3._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
4._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
5._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
6._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
7._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
8._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
9._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
10._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
11._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
12._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
13._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
14._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
15._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
16._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
17._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
18._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
19._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
20._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
21._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
22._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
23._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
24._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
25._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
26._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
27._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
28._RUQ_46
__CCGGTTCCCCAACTAA_GGAACC
29._RUQ_46
CGAAACGGTTCCCCAACTAAAGGGAACC
30._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
31._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
32._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
33._GC-03-4-1-4
CGAAACCCAACCGGAAAGAAAG_AA_
 1516171819202122232425262728
_Input profile
GGGGAACCAAGTGGCTCCGGAACTAGCC
1._SCA_19
GGGGAACCAAGTGGCTCCGGAACTAGCC
2._SCA_19
GGGGAACCAAGTGGCTCCGGAACTAGCC
3._GC-03-004-1-04
GGGGAACCAAGTGGCTCCGGAACTAGCC
4._GC-03-004-1-04
GGGGAACCAAGTGGCTCCGGAACTAGCC
5._GC-03-004-1-04
GGGGAACCAAGTGGCTCCGGAACTAGCC
6._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
7._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
8._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
9._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
10._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
11._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
12._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
13._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
14._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
15._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
16._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
17._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
18._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
19._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
20._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
21._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
22._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
23._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
24._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
25._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
26._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
27._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
28._RUQ_46
GGCCCCTT_GGCCTT____AACC
29._RUQ_46
GGCCCCTTAGGGCCTTCTCCTTCCAACC
30._SCA_19
GGCCCCTTAGGGCCTTCTCCTTCCAACC
31._GC-03-004-1-04
_CCCCTTAAGGCCTTCTCCTTCCAACC
32._SCA_19
_CCCCTTAAGGCCTTCTCCTTCCAACC
33._GC-03-4-1-4
CCCCCCAA_CCGGAAAGCCTTGGAAGG
 293031323334353637383940  
_Input profile
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
1._SCA_19
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
2._SCA_19
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
3._GC-03-004-1-04
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
4._GC-03-004-1-04
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
5._GC-03-004-1-04
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
6._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
7._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
8._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
9._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
10._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
11._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
12._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
13._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
14._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
15._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
16._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
17._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
18._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
19._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
20._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
21._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
22._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
23._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
24._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
25._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
26._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
27._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
28._RUQ_46
____GG___TTCCAG_X_XX_X
29._RUQ_46
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
30._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
31._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
32._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
33._GC-03-4-1-4
GGTT__CCAACCGGAAGGAGGGX_XX_X

Input profile: SCA_19

 
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Mars Center for Cocoa Science, Brazil
Location: 3104 16
 Dapeng Zhang, 2016

1._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 9 > FP
 Dapeng Zhang, 2016

2._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 8
 Dapeng Zhang, 2016

3._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

5._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

6._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 4 > FP
 Dapeng Zhang, 2016

8._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 6 > FP
 Dapeng Zhang, 2016

9._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

14._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 12 > F
 Dapeng Zhang, 2016

15._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

17._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

19._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 15
 Dapeng Zhang, 2016

21._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 14
 Dapeng Zhang, 2016

22._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 13
 Dapeng Zhang, 2016

23._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 10
 Dapeng Zhang, 2016

24._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 7
 Dapeng Zhang, 2016

25._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 5
 Dapeng Zhang, 2016

26._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 2
 Dapeng Zhang, 2016

27._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._SCA_19 RUQ_46

45.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._SCA_19 RUQ_46

45 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._SCA_19

45 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 748
 Dapeng Zhang, 2016

31._SCA_19 GC-03-004-1-04

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

32._SCA_19

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 11
 Dapeng Zhang, 2016

33._SCA_19 GC-03-4-1-4

22.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 1, Rep: 4, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520